研究業績
- Ueda, H. nanoDoc: RNA modification detection using Nanopore raw reads with Deep One-Class Classification. bioRxiv 2020.09.13.295089 (2020) doi:10.1101/2020.09.13.295089.
- Midorikawa, Y. et al. including Ueda, H Accumulation of Molecular Aberrations Distinctive to Hepatocellular Carcinoma Progression. Cancer Res. (2020) doi:10.1158/0008-5472.can-20-0225.
- Suzuki, A. et al. including Ueda, H Defined lifestyle and germline factors predispose Asian populations to gastric cancer. Sci. Adv. (2020) doi:10.1126/sciadv.aav9778.
- Sakata, R. C. et al. including Ueda, H Base editors for simultaneous introduction of C-to-T and A-to-G mutations. Nat. Biotechnol. (2020) doi:10.1038/s41587-020-0509-0.
- Nejo, T. et al. including Ueda, H Reduced neoantigen expression revealed by longitudinal multiomics as a possible immune evasion mechanism in glioma. Cancer Immunol. Res. (2019) doi:10.1158/2326-6066.CIR-18-0599.
- Nomura, M. et al. including Ueda, H DNA demethylation is associated with malignant progression of lower-grade gliomas. Sci. Rep. (2019) doi:10.1038/s41598-019-38510-0.
- Kohsaka, S. et al. including Ueda, H Comprehensive assay for the molecular profiling of cancer by target enrichment from formalin-fixed paraffin-embedded specimens. Cancer Sci. (2019) doi:10.1111/cas.13968.
- Aihara, K. et al. including Ueda, H Genetic and epigenetic stability of oligodendrogliomas at recurrence. Acta Neuropathol. Commun. (2017) doi:10.1186/s40478-017-0422-z.
- Nomura, M. et al. including Ueda, H Distinct molecular profile of diffuse cerebellar gliomas. Acta Neuropathol. (2017) doi:10.1007/s00401-017-1771-1.
- Midorikawa, Y. et al. including Ueda, H Genetic difference between multicentric carcinogenesis and intrahepatic metastasis of multiple hepatocellular carcinoma. J. Clin. Oncol. (2017) doi:10.1200/jco.2017.35.4_suppl.307.
- Fujimoto, A. et al. including Ueda, H Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat. Genet. (2016) doi:10.1038/ng.3547.
- Fukumura, K. et al. including Ueda, H Genomic characterization of primary central nervous system lymphoma. Acta Neuropathol. (2016) doi:10.1007/s00401-016-1536-2.
- Suzuki, T., Ueda, H., Okada, S. & Sakurai, M. Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method. Nat. Protoc. (2015) doi:10.1038/nprot.2015.037.
- Okada, S., Sakurai, M., Ueda, H. & Suzuki, T. Biochemical and Transcriptome-Wide Identification of A-to-I RNA Editing Sites by ICE-Seq. in Methods in Enzymology (2015). doi:10.1016/bs.mie.2015.03.014.
- Totoki, Y. et al. including Ueda, H Trans-ancestry mutational landscape of hepatocellular carcinoma genomes. Nat. Genet. (2014) doi:10.1038/ng.3126.
- Kakiuchi, M. et al. including Ueda, H Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma. Nat. Genet. (2014) doi:10.1038/ng.2984.
- Sakurai, M & Ueda, H et al. including A biochemical landscape of A-to-I RNA editing in the human brain transcriptome. Genome Res. (2014) doi:10.1101/gr.162537.113.
- Johnson, B. E. et al. including Ueda, H Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma. Science (80-. ). (2014) doi:10.1126/science.1239947.
- Wang, L. et al. including Ueda, H Whole-exome sequencing of human pancreatic cancers and characterization of genomic instability caused by MLH1 haploinsufficiency and complete deficiency. Genome Res. (2012) doi:10.1101/gr.123109.111.
- Sakurai, M., Yano, T., Kawabata, H., Ueda, H. & Suzuki, T. Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome. Nat. Chem. Biol. (2010) doi:10.1038/nchembio.434.
- Ohara, T. et al. including Ueda, H The 3′ termini of mouse Piwi-interacting RNAs are 2′-O-methylated. Nat. Struct. Mol. Biol. (2007) doi:10.1038/nsmb1220.
